PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G65130.1
Common NameERF057, MQN23.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 277aa    MW: 31210.4 Da    PI: 7.0463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G65130.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19110159255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr++  +g+WvAeIr p++   r+r +lg+f ta+eAa a+++a+ k++g
  AT5G65130.1 110 LYRGVRQRQ-WGKWVAEIRLPKN---RTRLWLGTFETAQEAALAYDQAAHKIRG 159
                  59****999.**********965...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.07E-33109168No hitNo description
Gene3DG3DSA:3.30.730.104.0E-32110168IPR001471AP2/ERF domain
PROSITE profilePS5103222.8110167IPR001471AP2/ERF domain
SMARTSM003801.1E-35110173IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-22110168IPR016177DNA-binding domain
PfamPF008473.3E-13111159IPR001471AP2/ERF domain
PRINTSPR003676.6E-11111122IPR001471AP2/ERF domain
PRINTSPR003676.6E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0004507developmental stageplant embryo bilateral stage
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MALNMNAYVD EFMEALEPFM KVTSSSSTSN SSNPKPLTPN FIPNNDQVLP VSNQTGPIGL  60
NQLTPTQILQ IQTELHLRQN QSRRRAGSHL LTAKPTSMKK IDVATKPVKL YRGVRQRQWG  120
KWVAEIRLPK NRTRLWLGTF ETAQEAALAY DQAAHKIRGD NARLNFPDIV RQGHYKQILS  180
PSINAKIESI CNSSDLPLPQ IEKQNKTEEV LSGFSKPEKE PEFGEIYGCG YSGSSPESDI  240
TLLDFSSDCV KEDESFLMGL HKYPSLEIDW DAIEKLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22109173469ATERF1
3gcc_A2e-22109173469ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible247227_at0.0
Expression AtlasAT5G65130-
AtGenExpressAT5G65130-
ATTED-IIAT5G65130-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G65130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9FJQ2
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G65130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankAY5608580.0AY560858.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65130) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankDQ4471090.0DQ447109.1 Arabidopsis thaliana clone pENTR221-At5g65130 AP2 domain-containing transcription factor (At5g65130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_201318.10.0ethylene-responsive transcription factor ERF057
SwissprotQ9FJQ20.0ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLD7MT811e-172D7MT81_ARALL; Putative uncharacterized protein
STRINGAT5G65130.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  3. Underwood BA,Vanderhaeghen R,Whitford R,Town CD,Hilson P
    Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.
    Plant Biotechnol. J., 2006. 4(3): p. 317-24
    [PMID:17147637]
  4. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  5. Okamuro JK,Caster B,Villarroel R,Van Montagu M,Jofuku KD
    The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(13): p. 7076-81
    [PMID:9192694]